1.
The Styx Book
2.
Getting started
2.1.
Runners
2.2.
I/O: Where are my files?
2.3.
Tips & best practices
2.4.
Styx on HPC clusters
3.
Advanced concepts
3.1.
Writing custom runners
4.
Contributing
4.1.
Contributing to NiWrap
4.2.
Automated descriptor creation in NiWrap
4.3.
Contributing to the Styx compiler
5.
Examples
5.1.
Example: MRI anatomical preproc
5.2.
Example: Generate mermaid graph
5.3.
Example: Dynamic runners
Light
Rust
Coal
Navy
Ayu
Styx Book
Styx on HPC clusters
TODO:
Explain singularityrunner, hint at putting styx_tmp on local scratch storage.